PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0564.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 1049aa    MW: 115938 Da    PI: 6.8468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0564.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008710131039123
                           EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                           ykC+   Cg sF+  s++ rH r+  H
  Kaladp0039s0564.3.p 1013 YKCKaeGCGVSFRFISDFSRHRRKtgH 1039
                           99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118416.031173IPR003347JmjC domain
PfamPF023738.4E-16356IPR003347JmjC domain
SuperFamilySSF511971.21E-9869No hitNo description
PROSITE patternPS000280932956IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-7941990No hitNo description
PROSITE profilePS5015712.778953982IPR007087Zinc finger, C2H2
SMARTSM003550.32953977IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280955977IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-6960983IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1969831012IPR007087Zinc finger, C2H2
SMARTSM003550.0029831007IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-109841007IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002809851007IPR007087Zinc finger, C2H2
SuperFamilySSF576678.83E-119931039No hitNo description
Gene3DG3DSA:3.30.160.601.7E-1010081036IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.63710131044IPR007087Zinc finger, C2H2
SMARTSM003551.510131039IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010151039IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MMLGEKTTLL SPEVVVASGI PCCRLVQNPG EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ  60
WLKVAKEAAV RRAAMNFLPM LSHQQLLYLL AMSFLTRVPR ALLVGARSSR LRDRMKEERE  120
LSVKKAFIED ILNEDKLLSV LRGAKSTYRA VLWDPESLPS LSKEPSLLSK MENTAANASD  180
SSNSCVFQSN HNLLDEMRFY TETMKDDYVD DDGFLSDFQV DYGAVACVAC GILGFPFMTV  240
VQPSEAASLH LRPLVENKSV AQDISCLDLD VSIDHSVSVL STPVVSSNMK VNKDQNASHR  300
FFRPRVFCLE HAVQVIELLE SKGGAEVLVI CHSDFQKIKS QAAAVAGELG SQYNYDMVPL  360
DCASLEDLNL IDLAVDEDRE ESDEDWSSVL GINLRCCIKM RKNSSSKHVD LALKLFGLPS  420
NITLGSSLSH LKWQHTRSRS KTPVLHDSKQ VSKLLSNRIK KEKKIIQYKR RKSKPKSFGS  480
APVRNTSLDC EENSASVSSD TDIAGINMSE LDNSVNINKS PASMTELNQV EGSLVTPCPS  540
LEIMHSDIVD QLEESGSVRC VCVSTSVDVV GVDNGVHDTR YKGETSLNCA VEHSSCADSP  600
VRMEGMSASE NNGQIRSTDT TNIKDTIEHE IAIHVDGKNV LTSMEPDLVA GGIPSAANPM  660
LGKTHMDNFT EWEVKDEVCA VIPHNERSNE GSPSLLSQSL TQMSAFEGSS TLLPLASCST  720
EEYVLVKDTQ SSKVADTPGT EENLCSASLD KLRDNSINAE PAYLVSIETS VGDDSSYEVV  780
QIRTLKGVDD KEDPNNCRLT DFNQVSLMSA GDESAAAKYM GASKNLYDVK TGETENNRVK  840
PKPSNRNARK RNRELEKLRD NKNEVADFIR SPCEGLRPRS KIASSSHNID VRHSYTEEPA  900
IAKKKLKHIP ADTSTSTPNK TGKQESKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC  960
GKKFSCHRYL IVHQRVHVDD RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC  1020
GVSFRFISDF SRHRRKTGHG GDTHSPLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hoo_B5e-17369231297Lysine-specific demethylase 4D
4hoo_A5e-17369231297Lysine-specific demethylase 4D
4hon_B5e-17369231297Lysine-specific demethylase 4D
4hon_A5e-17369231297Lysine-specific demethylase 4D
5fpb_A5e-17369235301LYSINE-SPECIFIC DEMETHYLASE 4D
5fpa_A5e-17369235301LYSINE-SPECIFIC DEMETHYLASE 4D
5fp9_A5e-17369235301HUMAN LYSINE-SPECIFIC DEMETHYLASE 4D JMJC DOM
5fp8_A5e-17369235301LYSINE-SPECIFIC DEMETHYLASE 4D
5fp4_A5e-17369235301LYSINE-SPECIFIC DEMETHYLASE 4D
3dxu_A5e-17369235301JmjC domain-containing histone demethylation
5f5c_A6e-17369246312Lysine-specific demethylase 4D
5f5a_A6e-17369246312Lysine-specific demethylase 4D
4d6s_A6e-17369243309LYSINE-SPECIFIC DEMETHYLASE 4D
4d6r_A6e-17369243309LYSINE-SPECIFIC DEMETHYLASE 4D
4d6q_A6e-17369243309LYSINE-SPECIFIC DEMETHYLASE 4D
3dxt_A7e-17269241308JmjC domain-containing histone demethylation
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233302.11e-174PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA01e-151ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLV4TDP11e-170V4TDP1_9R
STRINGPOPTR_0010s23160.11e-167(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-132C2H2 family protein